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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0213s0310.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 344aa MW: 38131.9 Da PI: 5.1753 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.1 | 2.5e-21 | 2 | 54 | 75 | 128 |
NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 nrat +gyWkatgkd+e+ + +++l +kktLvf++grap g++t+Wvmheyrl SapurV1A.0213s0310.2.p 2 NRATGKGYWKATGKDREIRR-QSQLLAMKKTLVFHSGRAPVGTRTNWVMHEYRL 54 8******************9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.075 | 1 | 78 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.07E-25 | 2 | 79 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-10 | 2 | 54 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MNRATGKGYW KATGKDREIR RQSQLLAMKK TLVFHSGRAP VGTRTNWVMH EYRLIDEDLE 60 RTGAMQIDSY VLCRVFHKNN IGPPTGNRYA PFIEEEWDDC GAALIPGEDA AADEVVVTHD 120 TGGEMHRTEQ DSHSINKSPL GITEVPGDSQ NALPVCKTES VEDCPPLCVL NTEAPLPLLQ 180 YKRRKHNNDT GSIRSNASEN STRTSQDPCS STTTTAATTS AEMMMATTSA TTTAISALLE 240 FSLMEPLEPK ENPRAPPPAL DAASLDSSMS PSCRKFINDL QSEIHKISVE RETLKLEVMS 300 AHTMINILQS RIDFLNKENE DLKRIDFLNK ENEDLKRSVP SEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swp_D | 1e-23 | 2 | 80 | 93 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-23 | 2 | 80 | 93 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-23 | 2 | 80 | 93 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-23 | 2 | 80 | 93 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-23 | 2 | 80 | 93 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-23 | 2 | 80 | 93 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-23 | 2 | 80 | 93 | 170 | NAC domain-containing protein 19 |
3swm_A | 1e-23 | 2 | 80 | 93 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-23 | 2 | 80 | 90 | 167 | NAC domain-containing protein 19 |
4dul_A | 1e-23 | 2 | 80 | 90 | 167 | NAC domain-containing protein 19 |
1ut7_B | 1e-23 | 2 | 80 | 90 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-23 | 2 | 80 | 90 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-23 | 2 | 80 | 90 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_A | 1e-23 | 2 | 80 | 90 | 167 | NO APICAL MERISTEM PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145394 | 0.0 | EF145394.1 Populus trichocarpa clone WS01124_C05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024336.1 | 0.0 | PREDICTED: NAC transcription factor NAM-A1 | ||||
TrEMBL | A9PB02 | 0.0 | A9PB02_POPTR; No apical meristem family protein | ||||
STRING | POPTR_0010s23630.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 1e-92 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0213s0310.2.p |